Computational biology of transcription factor binding / edited by Istvan Ladunga
- New York, NY : Humana Press, 
- Copyright Date:
- Physical Description:
- xi, 454 pages : illustrations (some color) ; 26 cm.
- Additional Creators:
- Ladunga, Istvan
- An overview of the computational analyses and discovery of transcription factor binding sites / Istvan Ladunga -- Components and mechanisms of regulation of gene expression / Alper Yilmaz -- Regulatory regions in DNA : promoters, enhancers, silencers, and insulators / Jean-Jack M. Riethoven -- Three-dimensional structures of DNA-bound transcriptional regulators / Tripti Shrivastava and Tahir H. Tahirov -- Identification of promoter regions and regulatory sites / Victor V. Solovyev, Ilham A. Shahmuradov, and Asaf A. Salamov -- Motif discovery using expectation maximization and Gibbs' sampling / Gary D. Stormo -- Probabilistic approaches to transcription factor binding site prediction / Stefan Posch ... [et al.] -- The motif tool assessment platform (MTAP) for sequence-based transcription factor binding site prediction tools / Daniel Quest and Hesham Ali -- Computational analysis of ChIP-seq data / Hongkai Ji -- Probabilistic peak calling and controlling false discovery rate estimations in transcription factor binding site mapping from ChIP-seq / Shuo Jiao ... [et al.] -- Sequence analysis of chromatin immunoprecipitation data for transcription factors / Kenzie D. MacIsaac and Ernest Fraenkel -- Inferring protein-DNA interaction parameters from SELEX experiments / Marko Djordjevic -- Kernel-based identification of regulatory modules / Sebastian J. Schultheiss -- Identification of transcription factor binding sites derived from transposable element sequences using ChIP-seq / Andrew B. Conley and I. King Jordan -- Target gene identification via nuclear receptor binding site prediction / Gabor Varga -- Computing chromosome conformation / James Fraser ... [et al.] -- Large-scale identification and analysis of C-proteins / Valery Sorokin, Konstantin Severinov, and Mikhail S. Gelfand -- Evolution of cis-regulatory sequences in Drosophila / Xin He and Saurabh Sinha -- Regulating the regulators : modulators of transcription factor activity / Logan Everett, Matthew Hansen, and Sridhar Hannenhalli -- Annotating the regulatory genome / Stephen B. Montgomery ... [et al.] -- Computational identification of plant transcription factors and the construction of the plantTFDB database / Kun He ... [et al.] -- Practical computational methods for regulatory genomics : a cisGRN-lexicon and cisGRN-browser for gene regulatory networks / Sorin Istrail ... [et al.] -- Reconstructing transcriptional regulatory networks using three-way mutual information and Bayesian networks/ Weijun Luo and Peter J. Woolf -- Computational methods for analyzing dynamic regulatory networks / Anthony Gitter, Yong Lu, and Ziv Bar-Joseph.
- 9781607618539 (alk. paper)
1607618532 (alk. paper)
- Bibliography Note:
- Includes bibliographical references and index.
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