Bacterial genome reengineering / Jindan Zhou and Kenneth E. Rudd -- Targeted chromosomal gene knockout using PCR fragments / Kenan C. Murphy -- Scarless chromosomal gene knockout methods / Bong Hyun Sung, Jun Hyoung Lee, and Sun Chang Kim -- Random chromosomal gene disruption in vivo using transposomes / Les M. Hoffman -- Genome engineering using targeted oligonucleotide libraries and functional selection / Elie J. Diner, Fernando Garza-Sanchez, and Christopher S. Hayes -- Microarray-based genetic footprinting strategy to identify strain improvement genes after competitive selection of transposon libraries / Alison K. Hottes and Saeed Tavazoie -- Optimization of synthetic operons using libraries of post-transcriptional regulatory elements / Daniel E. Agnew and Brian F. Pfleger -- Marker-free chromosomal expression of foreign and native genes in Escherichia coli / Chung-Jen Chiang ... [et al.] -- Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli / Mohan Babu ... [ et al.] -- Assembling new Escherichia coli strains by transduction using phage P1 / Sean D. Moore -- Yeast bioinformatics and strain engineering resources / Audrey L. Atkin -- Delete and repeat : a comprehensive toolkit for sequential gene knockout in the budding yeast Saccharomyces cerevisiae / Johannes H. Hegemann and Sven Boris Heick -- Genome-wide transposon mutagenesis in Saccharomyces cerevisiae and Candida albicans / Tao Xu, Nike Bharucha, and Anuj Kumar -- Signature-tagged mutagenesis to characterize genes through competitive selection of bar-coded genome libraries / Julia Oh and Corey Nislow -- Global strain engineering by mutant transcription factors / Amanda M. Lanza and Hal S. Alper -- Genomic promoter replacement cassettes to alter gene expression in the yeast Saccharomyces cerevisiae / Andreas Kaufmann and Michael Knop -- Microbial genome analysis and comparisons : web-based protocols and resources / Medha Bhagwat and Arvind A. Bhagwat -- Plasmid artificial modification : a novel method for efficient DNA transfer into bacteria / Tohru Suzuki and Kazumasa Yasui -- Broad-host-range plasmid vectors for gene expression in bacteria / Rahmi Lale, Trygve Brautaset, and Svein Valla -- Simple method for Introducing marker-free deletions in the Bacillus subtilis genome / Takuya Morimoto ... [et al.] -- Transposon-mediated random mutagenesis of Bacillus subtilis / Adam C. Wilson and Hendrik Szurmant -- Integrative food grade expression system for lactic acid bacteria / Grace L. Douglas, Yong Jun Goh, and Todd R. Klaenhammer -- Clostron-mediated engineering of Clostridium / Sarah A. Kuehne ... [et al.] -- High-throughput transposon mutagenesis of Corynebacterium glutamicum / Nobuaki Suzuki, Masayuki Inui, and Hideaki Yukawa -- Mini-mu transposon mutagenesis of ethanologenic Zymomonas mobilis / Katherine M. Pappas -- Engineering thermoacidophilic archaea using linear DNA recombination / Yukari Maezato, Karl Dana, and Paul Blum -- Targeted gene disruption in koji mold Aspergillus oryzae / Jun-ichi Maruyama and Katsuhiko Kitamoto -- Selectable and inheritable gene silencing through RNA interference in the unicellular alga Chlamydomonas reinhardtii / Karin van Dijk and Nandita Sarkar.
